常用生信分析软件

Posted 2021-01-17 azrael-cc

	官网	源码	安装&使用
BWA	http://bio-bwa.sourceforge.net/	https://sourceforge.net/projects/bio-bwa/files/	http://www.cnblogs.com/leezx/p/5601525.html http://cncbi.github.io/BWA-Manual-CN/
Minimap2	https://lh3.github.io/minimap2/	https://github.com/lh3/minimap2	https://github.com/lh3/minimap2/blob/master/README.md
Samtools	http://www.htslib.org/	https://github.com/samtools/samtools	http://www.htslib.org/download/ http://www.htslib.org/doc/samtools.html https://davetang.org/wiki/tiki-index.php?page=SAMTools
Picard	http://broadinstitute.github.io/picard/	https://github.com/broadinstitute/picard	http://broadinstitute.github.io/picard/ http://broadinstitute.github.io/picard/command-line-overview.html
GATK 3.8	https://software.broadinstitute.org/gatk/	https://github.com/broadgsa/gatk-protected	https://software.broadinstitute.org/gatk/documentation/quickstart?v=3
GATK 4.0	https://software.broadinstitute.org/gatk/	https://github.com/broadinstitute/gatk	https://github.com/broadinstitute/gatk
Biobambam2	https://github.com/gt1/biobambam2	https://github.com/gt1/biobambam2	https://github.com/gt1/biobambam2
vcftools	https://vcftools.github.io/index.html	https://github.com/vcftools/vcftools	https://vcftools.github.io/documentation.html https://vcftools.github.io/man_latest.html
SOAPdenovo2	ftp://public.genomics.org.cn/BGI/SOAPdenovo2 http://soap.genomics.org.cn/soapdenovo.html	https://github.com/aquaskyline/SOAPdenovo2	http://soap.genomics.org.cn/soapdenovo.html