pip install scipy on virtualenv 错误 RHEL6.5

Posted 2023-03-13

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【中文标题】pip install scipy on virtualenv 错误 RHEL6.5【英文标题】：pip install scipy on virtualenv error RHEL6.5 【发布时间】：2014-08-23 16:51:41 【问题描述】：

我已经在其他非堆栈溢出源中查阅过这些： Install line 'pip install scipy' fails

Installing SciPy with pip

install scipy using pip in virtualenv on ubuntu 12.04

Installing SciPy on Red Hat

RHEL6.5 发行版自带python2.6 我已经安装了virtualenv 和python2.7。使用pip install package name 安装包（在我的virtualenv 中，即在使用source MyEnvs/myEnv1/bin/activate 激活它之后）并可以使用yolk -l 验证我的环境具有我想要的包。直到我尝试pip install scipy 才找到所有内容，我收到以下错误：

[~]# pip install scipy 下载/解压 scipy 下载 scipy-0.14.0.tar.gz (10.2MB)：下载了 10.2MB 为包 scipy 运行 setup.py (path:/root/PythonVirtualEnvs/env1/build/scipy/setup.py) egg_info

warning: no previously-included files matching '*_subr_*.f' found under directory 'scipy/linalg/src/id_dist/src'
no previously-included directories found matching 'scipy/special/tests/data/boost'
no previously-included directories found matching 'scipy/special/tests/data/gsl'
no previously-included directories found matching 'doc/build'
no previously-included directories found matching 'doc/source/generated'
no previously-included directories found matching '*/__pycache__'
warning: no previously-included files matching '*~' found anywhere in distribution
warning: no previously-included files matching '*.bak' found anywhere in distribution
warning: no previously-included files matching '*.swp' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution

安装收集的包：scipy 为 scipy 运行 setup.py install blas_opt_info： blas_mkl_info：在 ['/root/PythonVirtualEnvs/env1/lib'、'/usr/local/lib64'、'/usr/local/lib'、'/usr/lib64'、'/usr/ 中找不到库 mkl、vml、指南库'] 不可用

openblas_info:
  libraries  not found in ['/root/PythonVirtualEnvs/env1/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in ['/root/PythonVirtualEnvs/env1/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64/atlas', '/usr/lib64/sse2', '/usr/lib64', '/usr/lib']
  NOT AVAILABLE

atlas_blas_info:
  libraries f77blas,cblas,atlas not found in ['/root/PythonVirtualEnvs/env1/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64/atlas', '/usr/lib64/sse2', '/usr/lib64', '/usr/lib']
  NOT AVAILABLE

/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/system_info.py:1521: UserWarning:
    Atlas (http://math-atlas.sourceforge.net/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [atlas]) or by setting
    the ATLAS environment variable.
  warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
  libraries blas not found in ['/root/PythonVirtualEnvs/env1/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
  NOT AVAILABLE

/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/system_info.py:1530: UserWarning:
    Blas (http://www.netlib.org/blas/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [blas]) or by setting
    the BLAS environment variable.
  warnings.warn(BlasNotFoundError.__doc__)
blas_src_info:
  NOT AVAILABLE

/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/system_info.py:1533: UserWarning:
    Blas (http://www.netlib.org/blas/) sources not found.
    Directories to search for the sources can be specified in the
    numpy/distutils/site.cfg file (section [blas_src]) or by setting
    the BLAS_SRC environment variable.
  warnings.warn(BlasSrcNotFoundError.__doc__)
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/root/PythonVirtualEnvs/env1/build/scipy/setup.py", line 237, in <module>
    setup_package()
  File "/root/PythonVirtualEnvs/env1/build/scipy/setup.py", line 234, in setup_package
    setup(**metadata)
  File "/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/core.py", line 135, in setup
    config = configuration()
  File "/root/PythonVirtualEnvs/env1/build/scipy/setup.py", line 173, in configuration
    config.add_subpackage('scipy')
  File "/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 966, in add_subpackage
    caller_level = 2)
  File "/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 935, in get_subpackage
    caller_level = caller_level + 1)
  File "/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 872, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "scipy/setup.py", line 12, in configuration
    config.add_subpackage('integrate')
  File "/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 966, in add_subpackage
    caller_level = 2)
  File "/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 935, in get_subpackage
    caller_level = caller_level + 1)
  File "/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 872, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "scipy/integrate/setup.py", line 12, in configuration
    blas_opt = get_info('blas_opt',notfound_action=2)
  File "/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 350, in get_info
    return cl().get_info(notfound_action)
  File "/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 509, in get_info
    raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError:
    Blas (http://www.netlib.org/blas/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [blas]) or by setting
    the BLAS environment variable.
Complete output from command /root/PythonVirtualEnvs/env1/bin/python2.7 -c "import setuptools, tokenize;__file__='/root/PythonVirtualEnvs/env1/build/scipy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-mun5c1-record/install-record.txt --single-version-externally-managed --compile --install-headers /root/PythonVirtualEnvs/env1/include/site/python2.7:
blas_opt_info:

blas_mkl_info：

库 mkl,vml,guide 在 ['/root/PythonVirtualEnvs/env1/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', ' /usr/lib']

不可用

openblas_info：

在 ['/root/PythonVirtualEnvs/env1/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib' 中找不到库]

不可用

atlas_blas_threads_info：

设置 PTATLAS=ATLAS

在 ['/root/PythonVirtualEnvs/env1/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64/atlas' 中找不到库 ptf77blas,ptcblas,atlas , '/usr/lib64/sse2', '/usr/lib64', '/usr/lib']

不可用

atlas_blas_info：

在 ['/root/PythonVirtualEnvs/env1/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64/atlas' 中找不到库 f77blas,cblas,atlas , '/usr/lib64/sse2', '/usr/lib64', '/usr/lib']

不可用

/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/system_info.py:1521：用户警告：

Atlas (http://math-atlas.sourceforge.net/) libraries not found.

Directories to search for the libraries can be specified in the

numpy/distutils/site.cfg file (section [atlas]) or by setting

the ATLAS environment variable.

warnings.warn(AtlasNotFoundError.doc)

blas_info：

在 ['/root/PythonVirtualEnvs/env1/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib ']

不可用

/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/system_info.py:1530：用户警告：

Blas (http://www.netlib.org/blas/) libraries not found.

Directories to search for the libraries can be specified in the

numpy/distutils/site.cfg file (section [blas]) or by setting

the BLAS environment variable.

warnings.warn(BlasNotFoundError.doc)

blas_src_info：

不可用

/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/system_info.py:1533：用户警告：

Blas (http://www.netlib.org/blas/) sources not found.

Directories to search for the sources can be specified in the

numpy/distutils/site.cfg file (section [blas_src]) or by setting

the BLAS_SRC environment variable.

warnings.warn(BlasSrcNotFoundError.doc)

Traceback（最近一次调用最后一次）：

文件“”，第 1 行，在

文件“/root/PythonVirtualEnvs/env1/build/scipy/setup.py”，第 237 行，在

setup_package()

文件“/root/PythonVirtualEnvs/env1/build/scipy/setup.py”，第 234 行，在 setup_package 中

setup(**metadata)

文件“/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/core.py”，第 135 行，在设置中

config = configuration()

文件“/root/PythonVirtualEnvs/env1/build/scipy/setup.py”，第 173 行，在配置中

config.add_subpackage('scipy')

文件“/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/misc_util.py”，第 966 行，在 add_subpackage 中

caller_level = 2)

文件“/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/misc_util.py”，第 935 行，在 get_subpackage 中

caller_level = caller_level + 1)

文件“/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/misc_util.py”，第 872 行，在 _get_configuration_from_setup_py 中

config = setup_module.configuration(*args)

文件“scipy/setup.py”，第 12 行，在配置中

config.add_subpackage('integrate')

文件“/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/misc_util.py”，第 966 行，在 add_subpackage 中

caller_level = 2)

文件“/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/misc_util.py”，第 935 行，在 get_subpackage 中

caller_level = caller_level + 1)

文件“/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/misc_util.py”，第 872 行，在 _get_configuration_from_setup_py 中

config = setup_module.configuration(*args)

文件“scipy/integrate/setup.py”，第 12 行，在配置中

blas_opt = get_info('blas_opt',notfound_action=2)

文件“/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/system_info.py”，第 350 行，在 get_info 中

return cl().get_info(notfound_action)

文件“/root/PythonVirtualEnvs/env1/lib/python2.7/site-packages/numpy/distutils/system_info.py”，第 509 行，在 get_info 中

raise self.notfounderror(self.notfounderror.__doc__)

numpy.distutils.system_info.BlasNotFoundError：

Blas (http://www.netlib.org/blas/) libraries not found.

Directories to search for the libraries can be specified in the

numpy/distutils/site.cfg file (section [blas]) or by setting

the BLAS environment variable.

正在清理... 命令 /root/PythonVirtualEnvs/env1/bin/python2.7 -c "import setuptools, tokenize;file='/root/PythonVirtualEnvs/env1/build/scipy/setup.py';exec(compile (getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" 安装 --record /tmp/pip-mun5c1-record/install-record.txt --single-version-externally-managed --compile --install-headers /root/PythonVirtualEnvs/env1/include/ site/python2.7 在 /root/PythonVirtualEnvs/env1/build/scipy 中出现错误代码 1 失败在 /root/.pip/pip.log 中存储失败的调试日志

我验证scipy、atlas、blas已经通过yum安装了。我不知道从哪里开始，我想找到一个使用pip的解决方案，即我不想做easy_install scipy如果您有任何建议请告诉我。

【问题讨论】：

【参考方案1】：

我通过安装以下软件包解决了这个问题：

sudo apt-get install python-pip python-dev build-essential sudo apt-get install libatlas-base-dev gfortran

然后通过

安装 numpy 或 scipy 和任何其他工具

pip install <package--name> inside your virtualenv

【讨论】：

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