Python Graphframes：安装依赖项时遇到问题

Posted 2023-04-15

【中文标题】Python Graphframes：安装依赖项时遇到问题

【英文标题】：Python Graphframes: trouble installing dependencies

【发布时间】：2019-10-24 09:15:42

【问题描述】：

我正在尝试运行simple Graphframes example。我有 Python 3.6.8 和 Python 2.7.15，以及 Apache Maven 3.6.0、Java 1.8.0、Apache Spark 2.4.4 和 Scala 代码运行器版本 2.11.12。

我收到了这个错误：

An error occurred while calling o58.loadClass.
: java.lang.ClassNotFoundException: org.graphframes.GraphFramePythonAPI

我试图启动this solution，但我卡在了第 2 步。

我运行pyspark --packages graphframes:graphframes:0.7.0-spark2.4-s_2.11 并得到以下输出：

Python 2.7.15+ (default, Jul  9 2019, 16:51:35) 
[GCC 7.4.0] on linux2
Type "help", "copyright", "credits" or "license" for more information.
Ivy Default Cache set to: /home/jessica/.ivy2/cache
The jars for the packages stored in: /home/jessica/.ivy2/jars
:: loading settings :: url = jar:file:/usr/local/spark/jars/ivy-2.4.0.jar!/org/apache/ivy/core/settings/ivysettings.xml
graphframes#graphframes added as a dependency
:: resolving dependencies :: org.apache.spark#spark-submit-parent-1be543dc-eac1-4324-bef5-4bab70bd9c95;1.0
    confs: [default]
downloading file:/home/jessica/.m2/repository/graphframes/graphframes/0.7.0-spark2.4-s_2.11/graphframes-0.7.0-spark2.4-s_2.11.jar ..
    [SUCCESSFUL ] graphframes#graphframes;0.7.0-spark2.4-s_2.11!graphframes.jar (18ms)
downloading file:/home/jessica/.m2/repository/org/slf4j/slf4j-api/1.7.16/slf4j-api-1.7.16.jar ...
    [SUCCESSFUL ] org.slf4j#slf4j-api;1.7.16!slf4j-api.jar (13ms)
:: resolution report :: resolve 786773ms :: artifacts dl 67ms
    :: modules in use:
    graphframes#graphframes;0.7.0-spark2.4-s_2.11 from local-m2-cache in [default]
    org.slf4j#slf4j-api;1.7.16 from spark-list in [default]
    ---------------------------------------------------------------------
    |                  |            modules            ||   artifacts   |
    |       conf       | number| search|dwnlded|evicted|| number|dwnlded|
    ---------------------------------------------------------------------
    |      default     |   2   |   1   |   1   |   0   ||   2   |   2   |
    ---------------------------------------------------------------------

:: problems summary ::
:::: ERRORS
    Server access error at url https://repo1.maven.org/maven2/graphframes/graphframes/0.7.0-spark2.4-s_2.11/graphframes-0.7.0-spark2.4-s_2.11-sources.jar (java.net.ConnectException: Connection timed out (Connection timed out))

    Server access error at url https://dl.bintray.com/spark-packages/maven/graphframes/graphframes/0.7.0-spark2.4-s_2.11/graphframes-0.7.0-spark2.4-s_2.11-sources.jar (java.net.ConnectException: Connection timed out (Connection timed out))

    Server access error at url https://repo1.maven.org/maven2/graphframes/graphframes/0.7.0-spark2.4-s_2.11/graphframes-0.7.0-spark2.4-s_2.11-src.jar (java.net.ConnectException: Connection timed out (Connection timed out))

    Server access error at url https://dl.bintray.com/spark-packages/maven/graphframes/graphframes/0.7.0-spark2.4-s_2.11/graphframes-0.7.0-spark2.4-s_2.11-src.jar (java.net.ConnectException: Connection timed out (Connection timed out))

    Server access error at url https://repo1.maven.org/maven2/graphframes/graphframes/0.7.0-spark2.4-s_2.11/graphframes-0.7.0-spark2.4-s_2.11-javadoc.jar (java.net.ConnectException: Connection timed out (Connection timed out))

    Server access error at url https://dl.bintray.com/spark-packages/maven/graphframes/graphframes/0.7.0-spark2.4-s_2.11/graphframes-0.7.0-spark2.4-s_2.11-javadoc.jar (java.net.ConnectException: Connection timed out (Connection timed out))

    unknown resolver sbt-chain

    unknown resolver null


:: USE VERBOSE OR DEBUG MESSAGE LEVEL FOR MORE DETAILS
:: retrieving :: org.apache.spark#spark-submit-parent-1a173e58-c356-43d7-9112-b06817ef3674
    confs: [default]
    2 artifacts copied, 0 already retrieved (411kB/27ms)
he19/10/25 10:39:01 WARN Utils: Your hostname, jessica-VirtualBox resolves to a loopback address: 127.0.1.1; using 10.0.2.15 instead (on interface enp0s3)
19/10/25 10:39:01 WARN Utils: Set SPARK_LOCAL_IP if you need to bind to another address
lp19/10/25 10:39:02 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Using Spark's default log4j profile: org/apache/spark/log4j-defaults.properties
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).
Exception in thread "main" java.nio.file.NoSuchFileException: /tmp/tmp6pP3C_/connection6206654157170594455.info
    at sun.nio.fs.UnixException.translateToIOException(UnixException.java:86)
    at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:102)
    at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:107)
    at sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:214)
    at java.nio.file.Files.newByteChannel(Files.java:361)
    at java.nio.file.Files.createFile(Files.java:632)
    at java.nio.file.TempFileHelper.create(TempFileHelper.java:138)
    at java.nio.file.TempFileHelper.createTempFile(TempFileHelper.java:161)
    at java.nio.file.Files.createTempFile(Files.java:852)
    at org.apache.spark.api.python.PythonGatewayServer$.main(PythonGatewayServer.scala:70)
    at org.apache.spark.api.python.PythonGatewayServer.main(PythonGatewayServer.scala)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.apache.spark.deploy.JavaMainApplication.start(SparkApplication.scala:52)
    at org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:845)
    at org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:161)
    at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:184)
    at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:86)
    at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:920)
    at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:929)
    at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)

不用说这不是预期的输出，所有超时的链接都会导致 404。我的电脑在代理后面，但代理设置是在 Maven 设置文件中配置的，我知道它们可以正常工作。

还有其他代理设置需要更改吗？是否有另一种安装这些依赖项的方法？

编辑

我将我的/usr/share/jupyter/kernels/python3/kernel.json 文件更改为：

 "argv": [
  "/usr/bin/python3",
  "-m",
  "ipykernel_launcher",
  "-f",
  "connection_file"
 ],
 "env": 
  "PYSPARK_SUBMIT_ARGS": "--packages graphframes:graphframes:0.7.0-spark2.4-s_2.11 --master local[10] pyspark-shell"
 ,
 "display_name": "Python 3",
 "language": "python"

然后尝试在 Jupyter Notebook 中运行我的 Python 脚本。这没有用。事实上，现在只要我运行我的 Python 脚本，它就会导致这个错误（在它导入所需的导入之后，它会崩溃）

编辑 2

我调整了我的 Firefox 并自己下载了文件。

-rw-rw-r-- 1 jessica jessica   381110 Oct 22 12:17 graphframes-0.7.0-spark2.4-s_2.11.jar
-rw-rw-r-- 1 jessica jessica     2541 Oct 22 12:14 graphframes-0.7.0-spark2.4-s_2.11.pom

然后我运行mvn install:install-file -Dfile=graphframes-0.7.0-spark2.4-s_2.11.jar -DpomFile=graphframes-0.7.0-spark2.4-s_2.11.pom，尽管该过程成功，但我仍然无法运行我的脚本（仍然出于相同的原因）。但是，现在我的 maven 存储库中有一个 graphframes 文件夹，其中包含所有必需的文件。

编辑 3

我已经卸载并重新安装了 Jupyter、notebook、graphframes、toree、iPython 并添加了 Anaconda - 全部适用于 Python 2.7 和 Python 3。我无法为 Python/Pyspark 安装 Apache Toree 内核 (v0.3.0)（我确实有 SQL 和 Scala，显然它不再支持 Python/Pyspark 内核 - 也欢迎解决此问题）。

我的SPARK_HOME=~/spark/spark-2.2.0-bin-hadoop2.7 变量以及PYSPARK_DRIVER_PYTHON="jupyter" 和PYSPARK_DRIVER_PYTHON_OPTS="notebook" 也已设置。

【参考方案1】：

我使用advice from this site解决了这个问题。

长话短说，把罐子直接放在$SPARK_HOME/jars

【参考方案2】：

我看到的和你看到的一样。问题在于托管工件shut down on May 2021 的存储库bintray。当您为图框指定 Maven 坐标时，您还应该 provide the current repository 托管此工件。

按以下方式执行 PySpark 对我有用。

pyspark \
    --packages graphframes:graphframes:0.8.1-spark2.4-s_2.11 \
    --repositories https://repos.spark-packages.org

【参考方案3】：

进一步推进简韦恩的回答。

from pyspark.sql import SparkSession

spark = (
    SparkSession
    .builder
    .master('yarn')
    .appName('GraphFrames_Test')
    .config("spark.jars.packages", "graphframes:graphframes:0.8.1-spark2.4-s_2.11")
    .config("spark.jars.repositories", "https://repos.spark-packages.org")
    .getOrCreate()
    )