尝试从 BigQuery 读取表并使用 Airflow 将其保存为数据框时出现 _pickle.PicklingError

Posted 2023-03-25

【中文标题】尝试从 BigQuery 读取表并使用 Airflow 将其保存为数据框时出现 _pickle.PicklingError

【英文标题】：_pickle.PicklingError when trying to read a table from BigQuery and save it as a dataframe using Airflow

【发布时间】：2021-09-22 09:37:15

【问题描述】：

从 Airflow 读取 BigQuery 表并将结果保存为数据框的最佳方法是什么？ 我有一个 python 模块来读取表格，并且可以在本地运行它来获取表格：

def reading(ds, **kwargs):
    project_id = 'project-id'
    credentials = service_account.Credentials.from_service_account_file('/usr/local/airflow/extras/credentials.json')
    bqclient = bq.Client(credentials= credentials,project=project_id)
    query_string = bqclient.query("""
        SELECT *
        FROM   `project-id.schema-name.table-name`""")

    dataframe = (
        bqclient.query(query_string)
        .result()
        .to_dataframe(
            create_bqstorage_client=True,
        )
    )
    print(dataframe.head())

但是，当我尝试在 Airflow DAG 中调用该模块时，会出现错误：

_pickle.PicklingError：明显不支持酸洗客户端对象。 客户端具有非平凡的本地和不可腌制的状态。

这是完整的错误堆栈：

*** Reading local file: /usr/local/airflow/logs/test_BQ_read/BQ_reading/2021-09-22T09:16:02.147166+00:00/1.log
[2021-09-22 09:16:05,401] taskinstance.py:897 INFO - Dependencies all met for <TaskInstance: test_BQ_read.BQ_reading 2021-09-22T09:16:02.147166+00:00 [queued]>
[2021-09-22 09:16:05,434] taskinstance.py:897 INFO - Dependencies all met for <TaskInstance: test_BQ_read.BQ_reading 2021-09-22T09:16:02.147166+00:00 [queued]>
[2021-09-22 09:16:05,434] taskinstance.py:1088 INFO - 
--------------------------------------------------------------------------------
[2021-09-22 09:16:05,434] taskinstance.py:1089 INFO - Starting attempt 1 of 1
[2021-09-22 09:16:05,434] taskinstance.py:1090 INFO - 
--------------------------------------------------------------------------------
[2021-09-22 09:16:05,454] taskinstance.py:1108 INFO - Executing <Task(PythonOperator): BQ_reading> on 2021-09-22T09:16:02.147166+00:00
[2021-09-22 09:16:05,469] standard_task_runner.py:52 INFO - Started process 37080 to run task
[2021-09-22 09:16:05,492] standard_task_runner.py:76 INFO - Running: ['airflow', 'tasks', 'run', 'test_BQ_read', 'BQ_reading', '2021-09-22T09:16:02.147166+00:00', '--job-id', '538', '--pool', 'default_pool', '--raw', '--subdir', 'DAGS_FOLDER/test_BQ_read.py', '--cfg-path', '/tmp/tmp3m9gbm14', '--error-file', '/tmp/tmps5fthy88']
[2021-09-22 09:16:05,494] standard_task_runner.py:77 INFO - Job 538: Subtask BQ_reading
[2021-09-22 09:16:05,606] logging_mixin.py:104 INFO - Running <TaskInstance: test_BQ_read.BQ_reading 2021-09-22T09:16:02.147166+00:00 [running]> on host ffce3e5ffe75
[2021-09-22 09:16:05,737] taskinstance.py:1303 INFO - Exporting the following env vars:
AIRFLOW_CTX_DAG_OWNER=airflow
AIRFLOW_CTX_DAG_ID=test_BQ_read
AIRFLOW_CTX_TASK_ID=BQ_reading
AIRFLOW_CTX_EXECUTION_DATE=2021-09-22T09:16:02.147166+00:00
AIRFLOW_CTX_DAG_RUN_ID=manual__2021-09-22T09:16:02.147166+00:00
[2021-09-22 09:16:06,165] taskinstance.py:1502 ERROR - Task failed with exception
Traceback (most recent call last):
  File "/usr/local/lib/python3.7/site-packages/airflow/models/taskinstance.py", line 1158, in _run_raw_task
    self._prepare_and_execute_task_with_callbacks(context, task)
  File "/usr/local/lib/python3.7/site-packages/airflow/models/taskinstance.py", line 1332, in _prepare_and_execute_task_with_callbacks
    result = self._execute_task(context, task_copy)
  File "/usr/local/lib/python3.7/site-packages/airflow/models/taskinstance.py", line 1362, in _execute_task
    result = task_copy.execute(context=context)
  File "/usr/local/lib/python3.7/site-packages/airflow/operators/python.py", line 150, in execute
    return_value = self.execute_callable()
  File "/usr/local/lib/python3.7/site-packages/airflow/operators/python.py", line 161, in execute_callable
    return self.python_callable(*self.op_args, **self.op_kwargs)
  File "/usr/local/airflow/dags/test_BQ_read.py", line 43, in reading
    result = bqclient.query(query_string)
  File "/usr/local/lib/python3.7/site-packages/google/cloud/bigquery/client.py", line 3223, in query
    query_job._begin(retry=retry, timeout=timeout)
  File "/usr/local/lib/python3.7/site-packages/google/cloud/bigquery/job/query.py", line 1138, in _begin
    super(QueryJob, self)._begin(client=client, retry=retry, timeout=timeout)
  File "/usr/local/lib/python3.7/site-packages/google/cloud/bigquery/job/base.py", line 468, in _begin
    data=self.to_api_repr(),
  File "/usr/local/lib/python3.7/site-packages/google/cloud/bigquery/job/query.py", line 819, in to_api_repr
    configuration = self._configuration.to_api_repr()
  File "/usr/local/lib/python3.7/site-packages/google/cloud/bigquery/job/query.py", line 605, in to_api_repr
    resource = copy.deepcopy(self._properties)
  File "/usr/local/lib/python3.7/copy.py", line 150, in deepcopy
    y = copier(x, memo)
  File "/usr/local/lib/python3.7/copy.py", line 241, in _deepcopy_dict
    y[deepcopy(key, memo)] = deepcopy(value, memo)
  File "/usr/local/lib/python3.7/copy.py", line 150, in deepcopy
    y = copier(x, memo)
  File "/usr/local/lib/python3.7/copy.py", line 241, in _deepcopy_dict
    y[deepcopy(key, memo)] = deepcopy(value, memo)
  File "/usr/local/lib/python3.7/copy.py", line 180, in deepcopy
    y = _reconstruct(x, memo, *rv)
  File "/usr/local/lib/python3.7/copy.py", line 281, in _reconstruct
    state = deepcopy(state, memo)
  File "/usr/local/lib/python3.7/copy.py", line 150, in deepcopy
    y = copier(x, memo)
  File "/usr/local/lib/python3.7/copy.py", line 241, in _deepcopy_dict
    y[deepcopy(key, memo)] = deepcopy(value, memo)
  File "/usr/local/lib/python3.7/copy.py", line 169, in deepcopy
    rv = reductor(4)
  File "/usr/local/lib/python3.7/site-packages/google/cloud/client.py", line 167, in __getstate__
    "Clients have non-trivial state that is local and unpickleable.",
_pickle.PicklingError: Pickling client objects is explicitly not supported.
Clients have non-trivial state that is local and unpickleable.
[2021-09-22 09:16:06,172] taskinstance.py:1552 INFO - Marking task as FAILED. dag_id=test_BQ_read, task_id=BQ_reading, execution_date=20210922T091602, start_date=20210922T091605, end_date=20210922T091606
[2021-09-22 09:16:06,368] local_task_job.py:153 INFO - Task exited with return code 1

关于如何正确阅读表格有什么建议吗？

【参考方案1】：

我认为你需要显示你正在使用的 DAG - 但我猜你的运营商试图在你的运营商的 init 中实例化谷歌客户端（可能你创建并分配 Hook 到那里的某个字段）。这是完全错误的——钩子只能在操作符的“执行”方法中实例化，并且在构造时不应该存储在操作符对象中。

查看任何 Google 运营商：https://github.com/apache/airflow/tree/main/airflow/providers/google/cloud/operators

【参考方案2】：

这就是我对 python 模块进行更改的方式

from google.cloud import bigquery
from google.oauth2 import service_account
import google.auth
from datetime import datetime, timedelta
from airflow import DAG
from airflow import models
from airflow.models import Variable
import pandas as pd
from airflow.operators.python_operator import PythonOperator

def reading(ds, **kwargs):
    credentials = service_account.Credentials.from_service_account_file('/usr/local/airflow/extras/credentials.json')
    project_id = 'project-id'
    bqclient = bigquery.Client(credentials= credentials,project=project_id)

    # Download a table.
    table = bigquery.TableReference.from_string(
        ""project-id.schema_name.table_name"
    )

    rows = bqclient.list_rows(
        table,
    )

    dataframe = rows.to_dataframe(
        create_bqstorage_client=True,
    )
    print(dataframe.head())

with models.DAG(
    'test_BQ_read',
    schedule_interval=None,
    start_date='2021-09-22',
    tags=["example"],
    catchup=False
) as dag:

    BQ_reading = PythonOperator(
        task_id='BQ_reading',
        python_callable=reading,
    )

可能与导致 pickle 错误的 pandas 和 BigQuery 有关。