Fortran 和 c 互操作性

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【中文标题】Fortran 和 c 互操作性【英文标题】:Fortran and c interoperability 【发布时间】:2015-09-03 11:40:05 【问题描述】:

我一直在写一个Fortran和C接口,但是总是出现错误。我不确定为什么会出现问题。原C代码如下:

#include <stdlib.h>
#include <stdio.h>
#include <gsl/gsl_vector.h>
#include <gsl/gsl_multiroots.h>

void gsl_vector_setvalue(gsl_vector* v, size_t index, double value)

   gsl_vector_set(v, index-1, value);


double gsl_vector_getvalue(gsl_vector* v, size_t index)

   return gsl_vector_get(v, index-1);


int rosenbrock_f (const gsl_vector * x, void * params, gsl_vector * f)

   double x0 = gsl_vector_get (x, 0);
   double x1 = gsl_vector_get (x, 1);
   double y0 = 1. * (1 - x0);
   double y1 = 10. * (x1 - x0 * x0);
   gsl_vector_set (f, 0, y0);
   gsl_vector_set (f, 1, y1);
   return GSL_SUCCESS;


int print_state (size_t iter, gsl_multiroot_fsolver * s)

    printf ("iter = %3zu x = % .3f % .3f " "f(x) = % .3e % .3e\n", iter, gsl_vector_get (s->x, 0), gsl_vector_get (s->x, 1), gsl_vector_get (s->f, 0), gsl_vector_get (s->f, 1));


void gsl_multiroots(int rosenbrock())

   const gsl_multiroot_fsolver_type *T;
   gsl_multiroot_fsolver *s;
   int status;
   size_t i, iter = 0;
   const size_t n = 2;
   //struct rparams p = 1.0, 10.0;
   struct rparams *p=NULL;
   gsl_multiroot_function f = rosenbrock, n, p;
   double x_init[2] = -10.0, -5.0;
   gsl_vector *x = gsl_vector_alloc (n);
   gsl_vector_set (x, 0, x_init[0]);
   gsl_vector_set (x, 1, x_init[1]);
   T = gsl_multiroot_fsolver_hybrids;
   s = gsl_multiroot_fsolver_alloc (T, 2);
   gsl_multiroot_fsolver_set (s, &f, x);
   print_state (iter, s);
   do
   
      iter++;
      status = gsl_multiroot_fsolver_iterate (s);
      print_state (iter, s);
      if (status) break;
/* check if solver is stuck */
      status = gsl_multiroot_test_residual (s->f, 1e-7);
   
   while (status == GSL_CONTINUE && iter < 1000);
   printf ("status = %s\n", gsl_strerror (status));
   gsl_multiroot_fsolver_free (s);
   gsl_vector_free (x);


int main()

   gsl_multiroots(rosenbrock_f);
   return 0;

当我编译链接它时,它可以运行并得到正确的结果。 但是当我在Fortran代码中写rosenbrock_f并使用内部模式iso_c_binding使它们互操作时,它不能有结果,只能说

> Program received signal SIGSEGV: Segmentation fault - invalid memory
> reference.
> 
> Backtrace for this error:
> #0  0x7FCE7F618777
> #1  0x7FCE7F618D7E
> #2  0x7FCE7F270D3F
> #3  0x7FCE7FCF68AD
> #4  0x400BAE in gsl_vector_getvalue
> #5  0x400E45 in rosenbrock.1876 at multiroot.f90:?
> #6  0x7FCE7FC4A923
> #7  0x400D6F in gsl_multiroots
> #8  0x400F0D in MAIN__ at multiroot.f90:? Segmentation fault (core dumped)

这里是 C 和 Fortran 代码:

#include <stdlib.h>
#include <stdio.h>
#include <gsl/gsl_vector.h>
#include <gsl/gsl_multiroots.h>

void gsl_vector_setvalue(gsl_vector* v, size_t index, double value)

   gsl_vector_set(v, index-1, value);


double gsl_vector_getvalue(gsl_vector* v, size_t index)

   return gsl_vector_get(v, index-1);


int print_state (size_t iter, gsl_multiroot_fsolver * s)

    printf ("iter = %3zu x = % .3f % .3f " "f(x) = % .3e % .3e\n", iter, gsl_vector_get (s->x, 0), gsl_vector_get (s->x, 1), gsl_vector_get (s->f, 0), gsl_vector_get (s->f, 1));


void gsl_multiroots(int rosenbrock())

   const gsl_multiroot_fsolver_type *T;
   gsl_multiroot_fsolver *s;
   int status;
   size_t i, iter = 0;
   const size_t n = 2;
   struct rparams *p=NULL;
   gsl_multiroot_function f = rosenbrock, n, p;
   double x_init[2] = -10.0, -5.0;
   gsl_vector *x = gsl_vector_alloc (n);
   gsl_vector_set (x, 0, x_init[0]);
   gsl_vector_set (x, 1, x_init[1]);
   T = gsl_multiroot_fsolver_hybrids;
   s = gsl_multiroot_fsolver_alloc (T, 2);
   gsl_multiroot_fsolver_set (s, &f, x);
   print_state (iter, s);
   do
   
      iter++;
      status = gsl_multiroot_fsolver_iterate (s);
      print_state (iter, s);
      if (status) break;
/* check if solver is stuck */
      status = gsl_multiroot_test_residual (s->f, 1e-7);
   
   while (status == GSL_CONTINUE && iter < 1000);
   printf ("status = %s\n", gsl_strerror (status));
   gsl_multiroot_fsolver_free (s);
   gsl_vector_free (x);

fortran 模块:

MODULE gsl_interfaces

USE, INTRINSIC :: ISO_C_BINDING

IMPLICIT NONE

TYPE, BIND(C) :: gsl_block
   INTEGER(C_SIZE_T) :: size
   TYPE(C_PTR) :: data
END TYPE gsl_block

TYPE, BIND(C) :: gsl_vector
   INTEGER(C_SIZE_T) :: size
   INTEGER(C_SIZE_T) :: stride
   REAL(C_DOUBLE) :: data
   TYPE(C_PTR) :: block
   INTEGER(C_INT) :: owner
END TYPE gsl_vector

TYPE, BIND(C) :: gsl_matrix
   INTEGER(C_SIZE_T) :: size1
   INTEGER(C_SIZE_T) :: size2
   INTEGER(C_SIZE_T) :: tda
   REAL(C_DOUBLE) :: data
   TYPE(C_PTR) :: block
   INTEGER(C_INT) :: owner
END TYPE gsl_matrix

TYPE, BIND(C) :: rparams
   REAL(C_DOUBLE) :: A
   real(c_double) :: b
END TYPE

INTERFACE
   SUBROUTINE GSL_VECTOR_SETVALUE(V, ROW_INDEX, V_VALUE) BIND(C, NAME='gsl_vector_setvalue')
      USE ISO_C_BINDING
      import gsl_vector
      TYPE(c_ptr), VALUE :: V
      INTEGER :: ROW_INDEX
      REAL(C_DOUBLE), VALUE :: V_VALUE
   END SUBROUTINE GSL_VECTOR_SETVALUE
   REAL(C_DOUBLE) FUNCTION GSL_VECTOR_GETVALUE(V, ROW_INDEX) BIND(C, NAME='gsl_vector_getvalue')
      USE ISO_C_BINDING
      import gsl_vector
      TYPE(c_ptr), VALUE :: V
      INTEGER :: ROW_INDEX
   END FUNCTION GSL_VECTOR_GETVALUE
   SUBROUTINE GSL_MULTIROOTS(ROSENBROCK) BIND(C, NAME='gsl_multiroots')
      USE ISO_C_BINDING
      type(c_funptr), value :: ROSENBROCK
!      TYPE(c_ptr), value :: x
   END SUBROUTINE
!   INTEGER(C_INT) FUNCTION ROSENBROCK(x, params, f) BIND(C, NAME='rosenbrock_f')
!      USE ISO_C_BINDING
!      import gsl_vector
!      IMPORT rparams
!      TYPE(gsl_vector), target :: x, f
!      TYPE(C_PTR), target :: params
!   END FUNCTION ROSENBROCK
END INTERFACE
END MODULE gsl_interfaces

fortran 程序:

PROGRAM MULTIROOT

USE, INTRINSIC :: ISO_C_BINDING
USE GSL_INTERFACES
IMPLICIT NONE
integer(c_int), parameter :: GSL_SUCCESS=0
type(gsl_vector), target :: x, f

CALL GSL_MULTIROOTS(c_funloc(ROSENBROCK))

contains
   integer(c_int) function rosenbrock(x, params, f) bind(c)
      use iso_c_binding
      use gsl_interfaces
      type(c_ptr) :: x, f
      type(c_ptr) :: params
      real(c_double) :: x0, x1, y0, y1
      !a=params%a
      !b=params%b
      x0 = gsl_vector_getvalue (x, 1)
      x1 = gsl_vector_getvalue (x, 2)
      y0 = 1. * (1 - x0)
      y1 = 10. * (x1 - x0 * x0)
      call gsl_vector_setvalue (f, 1, y0)
      call gsl_vector_setvalue (f, 2, y1)
      rosenbrock=GSL_SUCCESS
   end function rosenbrock
END PROGRAM 

有人可以帮帮我吗?不知道为什么会出现内存无效引用。

【问题讨论】:

虽然不是很确定,但是写“void gsl_multiroots(int rosenbrock())”而不是“void gsl_multiroots(int (* rosenbrock)())”是不是没问题...?跨度> 我试过你的答案,但它不起作用。谢谢你回答我的问题。我想整数(c_int)函数rosenbrock中的参数有一些错误。 再试一次:如何将 VALUE 属性附加到 rosenbrock() 中的所有虚拟参数(x、f 和 params)......? 接口块中的ROW_INDEX可能还需要VALUE...嗯,很复杂。 GSL 有一个公共的 Fortran 接口:lrz.de/services/software/mathematik/gsl/fortran。查看他们的实施可能会有所帮助。 【参考方案1】:

注意:M. S. B. 指出,GNU 科学图书馆已经存在 Fortran wrapper。

以下是 gcc 5.2 对我有用的内容。

我修改了您的 C 代码以与gsl documentation 中给出的示例保持一致,因为我不确定您的函数描述的顺序是否与接口匹配。此外,我更改了函数指针声明以匹配 gsl 所期望的。

#include <stdlib.h>                                                                                                                                   
#include <stdio.h>                                                                                                                                    
#include <gsl/gsl_vector.h>                                                                                                                           
#include <gsl/gsl_multiroots.h>                                                                                                                       


void gsl_vector_setvalue(gsl_vector* v, size_t index, double value)                                                                                   
                                                                                                                                                     
  gsl_vector_set(v, index-1, value);                                                                                                                 
                                                                                                                                                     

double gsl_vector_getvalue(gsl_vector* v, size_t index)                                                                                               
                                                                                                                                                     
  return gsl_vector_get(v, index-1);                                                                                                                 
                                                                                                                                                     

int print_state (size_t iter, gsl_multiroot_fsolver * s)                                                                                              
                                                                                                                                                     
  printf ("iter = %3zu x = % .3f % .3f " "f(x) = % .3e % .3e\n", iter, gsl_vector_get (s->x, 0), gsl_vector_get (s->x, 1), gsl_vector_get (s->f, 0), gsl_vector_get (s->f, 1));                                                                                                                           
                                                                                                                                                     

void gsl_multiroots(int (*rosenbrock)(gsl_vector *x, void *p, gsl_vector *f))                                                                         
                                                                                                                                                     
  const gsl_multiroot_fsolver_type *T;                                                                                                               
  gsl_multiroot_fsolver *s;                                                                                                                          
  int status;                                                                                                                                        
  size_t i, iter = 0;                                                                                                                                
  const size_t n = 2;                                                                                                                                
  void *p = NULL;                                                                                                                                    
  gsl_multiroot_function f;                                                                                                                          
  f.f = rosenbrock;                                                                                                                                  
  f.n = n;                                                                                                                                           
  f.params = &p;                                                                                                                                     
  double x_init[2] = -10.0, -5.0;                                                                                                                  
  gsl_vector *x = gsl_vector_alloc (n);                                                                                                              
  gsl_vector_set (x, 0, x_init[0]);                                                                                                                  
  gsl_vector_set (x, 1, x_init[1]);                                                                                                                  
  T = gsl_multiroot_fsolver_hybrids;                                                                                                                 
  s = gsl_multiroot_fsolver_alloc (T, 2);                                                                                                            
  gsl_multiroot_fsolver_set (s, &f, x);                                                                                                              
  print_state (iter, s);                                                                                                                             
  do                                                                                                                                                 
                                                                                                                                                    
    iter++;                                                                                                                                         
    status = gsl_multiroot_fsolver_iterate (s);                                                                                                     
    print_state (iter, s);                                                                                                                          
    if (status) break;                                                                                                                              
    /* check if solver is stuck */                                                                                                                        
    status = gsl_multiroot_test_residual (s->f, 1e-7);                                                                                              
                                                                                                                                                    
  while (status == GSL_CONTINUE && iter < 1000);                                                                                                     
  printf ("status = %s\n", gsl_strerror (status));                                                                                                   
  gsl_multiroot_fsolver_free (s);                                                                                                                    
  gsl_vector_free (x);                                                                                                                               

在接口中,我为整数添加了 value 属性,这些属性应该是按值参数调用的:

MODULE gsl_interfaces                                                                                                                                 

  USE, INTRINSIC :: ISO_C_BINDING                                                                                                                       

  IMPLICIT NONE                                                                                                                                         

  INTERFACE                                                                                                                                             
    SUBROUTINE GSL_VECTOR_SETVALUE(V, ROW_INDEX, V_VALUE) BIND(C, NAME='gsl_vector_setvalue')                                                          
      USE ISO_C_BINDING                                                                                                                               
      TYPE(c_ptr), VALUE :: V                                                                                                                         
      INTEGER,value :: ROW_INDEX                                                                                                                      
      REAL(C_DOUBLE), VALUE :: V_VALUE                                                                                                                
    END SUBROUTINE GSL_VECTOR_SETVALUE                                                                                                                 

    REAL(C_DOUBLE) FUNCTION GSL_VECTOR_GETVALUE(V, ROW_INDEX) BIND(C, NAME='gsl_vector_getvalue')                                                      
      USE ISO_C_BINDING                                                                                                                               
      TYPE(c_ptr), VALUE :: V                                                                                                                         
      INTEGER,value :: ROW_INDEX                                                                                                                      
    END FUNCTION GSL_VECTOR_GETVALUE                                                                                                                   
    SUBROUTINE GSL_MULTIROOTS(ROSENBROCK) BIND(C, NAME='gsl_multiroots')                                                                               
      USE ISO_C_BINDING                                                                                                                               
      type(c_funptr), value :: ROSENBROCK                                                                                                             
    END SUBROUTINE                                                                                                                                     
  END INTERFACE                                                                                                                                         
END MODULE gsl_interfaces

在 Rosenbrock 函数中,我为 c_ptr 参数添加了缺失值属性:

PROGRAM MULTIROOT                                                                                                                                     

  USE, INTRINSIC :: ISO_C_BINDING                                                                                                                       
  USE GSL_INTERFACES                                                                                                                                    
  IMPLICIT NONE                                                                                                                                         
  integer(c_int), parameter :: GSL_SUCCESS=0                                                                                                            

  CALL GSL_MULTIROOTS(c_funloc(ROSENBROCK))                                                                                                             

contains                                                                                                                                              
  integer(c_int) function rosenbrock(x, params, f) bind(c)                                                                                           
    use iso_c_binding                                                                                                                               
    use gsl_interfaces                                                                                                                              
    type(c_ptr),value :: x, f                                                                                                                       
    type(c_ptr),value :: params                                                                                                                     
    real(c_double) :: x0, x1, y0, y1                                                                                                                
    !a=params%a                                                                                                                                     
    !b=params%b                                                                                                                                     
    x0 = gsl_vector_getvalue (x, 1)                                                                                                                 
    x1 = gsl_vector_getvalue (x, 2)                                                                                                                 
    y0 = 1. * (1 - x0)                                                                                                                              
    y1 = 10. * (x1 - x0 * x0)                                                                                                                       
    call gsl_vector_setvalue (f, 1, y0)                                                                                                             
    call gsl_vector_setvalue (f, 2, y1)                                                                                                             
    rosenbrock=GSL_SUCCESS                                                                                                                          
  end function rosenbrock                                                                                                                            
END PROGRAM

运行时,我得到:

iter =   0 x = -10.000 -5.000 f(x) =  1.100e+01 -1.050e+03
iter =   1 x = -10.000 -5.000 f(x) =  1.100e+01 -1.050e+03
iter =   2 x = -3.976  24.827 f(x) =  4.976e+00  9.020e+01
iter =   3 x = -3.976  24.827 f(x) =  4.976e+00  9.020e+01
iter =   4 x = -3.976  24.827 f(x) =  4.976e+00  9.020e+01
iter =   5 x = -1.274 -5.680 f(x) =  2.274e+00 -7.302e+01
iter =   6 x = -1.274 -5.680 f(x) =  2.274e+00 -7.302e+01
iter =   7 x =  0.249  0.298 f(x) =  7.511e-01  2.359e+00
iter =   8 x =  0.249  0.298 f(x) =  7.511e-01  2.359e+00
iter =   9 x =  1.000  0.878 f(x) = -2.653e-10 -1.218e+00
iter =  10 x =  1.000  0.989 f(x) = -2.353e-11 -1.080e-01
iter =  11 x =  1.000  1.000 f(x) =  0.000e+00  0.000e+00
status = success

我希望这有点用处,可以帮助您实现您真正想要实现的目标。如果可能的话,我会远离为 C 结构声明 Fortran 类型。如果你可以在调用者中只使用 c_ptr 作为句柄,那应该不会那么痛苦。

【讨论】:

这个结果正是我想要的。但我很困惑为什么 x、params 和 f 应该具有价值属性。它们是 c 代码中的指针。和 x & f 是 gsl_vector 类型,它们不是值。 @zmwang 在你的函数声明中它们是 type(c_ptr),因此它们需要具有 value 属性,因为 c 接口也“只有”一个 c 指针而不是指向指针的指针.它与 GSL_VECTOR_SET|GETVALUE 中的 v 的逻辑相同,您正确地进行了此声明。

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