无法使用conda安装bcftools-gtc2vcf-plugin

Posted 2021-05-03

我已按照https://bioconda.github.io/user/install.html#set-up-channels的说明安装了Bioconda。然后我尝试了

conda install bwa
conda install bcftools
conda install plink2

他们都安装得很好。但是，当我尝试

conda install bcftools-gtc2vcf-plugin

或

conda install -c bioconda bcftools-gtc2vcf-plugin 

按照https://bioconda.github.io/recipes/bcftools-gtc2vcf-plugin/README.html的指示，出现如下错误：

Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - bcftools-gtc2vcf-plugin

Current channels:

  - https://conda.anaconda.org/bioconda/osx-64
  - https://conda.anaconda.org/bioconda/noarch
  - https://conda.anaconda.org/conda-forge/osx-64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://repo.anaconda.com/pkgs/main/osx-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/osx-64
  - https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.

任何帮助将不胜感激。

提前感谢！

答案

我建议（从2020年1月6日开始）不要使用bcftools-gtc2vcf-plugin，因为它是一个旧版本，与当前版本相比缺少许多功能。我建议从源代码（https://github.com/freeseek/gtc2vcf）进行编译，或者下载应该在安装了≥GLIBC_2.3的系统上工作的预编译二进制文件（https://personal.broadinstitute.org/giulio/gtc2vcf）（并确保您正在运行最新版本的BCFtools）