一条SQL引发系统out of memory PostgreSQL
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错误描述
(1) Postgres执行的原SQL：
select COALESCE(m1.place_id, m2.place_id, m3.place_id) as place_id, concat_ws('``', m1.rich_attributes, m2.rich_attributes, m3.rich_attributes) as rich_attributes from
(SELECT place_external_points.place_id, string_agg(concat(place_external_points.metadata_dictionary_id, '@[email protected]', place_external_points.value), '``'::text) AS rich_attributes
FROM place_external_points b WHERE metadata_dictionary_id = ANY (ARRAY[61, 62]) group by place_external_points.place_id) m1
full join
(SELECT place_geocoded.place_id, string_agg(concat(place_geocoded.metadata_dictionary_id, '@[email protected]', place_geocoded.value), '``'::text) AS rich_attributes FROM place_geocoded g
WHERE metadata_dictionary_id = ANY (ARRAY[70, 71, 72, 73, 74, 75, 76, 77, 78]) group by place_geocoded.place_id) m2 on m1.place_id = m2.place_id
full join
(SELECT place_attributes.place_id, string_agg(concat(place_attributes.metadata_dictionary_id, '@[email protected]', place_attributes.value), '``'::text) AS rich_attributes FROM
place_attributes a WHERE place_attributes.metadata_dictionary_id = ANY (ARRAY[5, 7, 9, 10, 11, 12, 13, 33, 35, 46, 51, 52, 53, 54, 55, 57, 58, 59]) group by a.place_id) m3 on m2.place_id = m3.place_id;
(2) 系统日志message:
Dec 27 10:39:13 shb-postgresql-01 kernel: Out of memory: Kill process 9116 (postgres) score 823 or sacrifice child
Dec 27 10:39:13 shb-postgresql-01 kernel: Killed process 9116, UID 501, (postgres) total-vm:40440476kB, anon-rss:28320224kB, file-rss:2154596kB
Dec 27 10:39:13 shb-postgresql-01 kernel: postgres: page allocation failure. order:0, mode:0x280da
Dec 27 10:39:13 shb-postgresql-01 kernel: Pid: 9116, comm: postgres Not tainted 2.6.32-431.el6.x86_64 #1
(3) 数据库日志：
less /usr/local/pgsql/data/pg_log/postgresql-2017-12-29_000000.log
WARNING: terminating connection because of crash of another server process
DETAIL: The postmaster has commanded this server process to roll back the current transaction and exit, because another server process exited abnormally and possibly corrupted shared memory.
HINT: In a moment you should be able to reconnect to the database and repeat your command.
FATAL: the database system is in recovery mode
LOG: all server processes terminated; reinitializing
LOG: database system was interrupted; last known up at 2017-12-29 09:20:36 CST
FATAL: the database system is in recovery mode
FATAL: the database system is in recovery mode
FATAL: the database system is in recovery mode
FATAL: the database system is in recovery mode
FATAL: the database system is in recovery mode
FATAL: the database system is in recovery mode
FATAL: the database system is in recovery mode
LOG: database system was not properly shut down; automatic recovery in progress
LOG: invalid record length at 94A/478309C0
LOG: redo is not required
LOG: MultiXact member wraparound protections are now enabled
LOG: database system is ready to accept connections
LOG: autovacuum launcher started
(4) 脚本运行的时候内存变化：
# free -g
total used free shared buffers cached
Mem: 31 31 0 0 0 0
-/+ buffers/cache: 31 0
Swap: 7 3 4
原因：通过以上信息可以发现是postgres的查询SQL把内存消耗殆尽，并且开始使用swap分区，导致系统发生oom-kill,数据库进程被干掉，然后重启恢复。
分析过程
(1) 表place_external_points和place_geocoded经查看都为空，表place_attributes有1亿多条数据,所以问题发生在最后一条select xxx from place_attributes语句上，这个表的列metadata_dictionary_id有对应的索引
# \d place_attributes;
Table "denali_search_cn_17q3_20171226_epl.place_attributes"
Column | Type | Modifiers
------------------------+--------------------------------+---------------
place_id | integer |
metadata_dictionary_id | integer |
value | text |
lang | character varying(50) |
source | character varying(50) |
create_time | timestamp(6) without time zone | default now()
update_time | timestamp(6) without time zone |
Indexes:
"place_attributes_metadata_dictionary_id_idx" btree (metadata_dictionary_id)
"place_attributes_place_id_metadata_dictionary_id_idx" btree (place_id, metadata_dictionary_id)
"place_attributes_value_idx" btree (value)
(2) 通过执行计划explain发现使用了hash聚合：hashaggregate，SQL本身是group by ,没有使用group聚合，却使用了hash聚合，可初步判断数据库执行计划不是最优的：
# explain SELECT place_id, string_agg(concat(metadata_dictionary_id, '@[email protected]', value), '``'::text) AS rich_attributes FROM place_attributes WHERE metadata_dictionary_id = ANY (ARRAY[5, 7, 9, 10, 11, 12, 13, 33, 35, 46, 51, 52, 53, 54, 55, 57, 58, 59]) group by place_attributes.place_id;
QUERY PLAN
------------------------------------------------------------------------------------------------------------------------------------
HashAggregate (cost=7622781.80..7985216.03 rows=323575 width=62)
Group Key: place_id
-> Sort (cost=7622781.80..7712379.18 rows=35838955 width=62)
Sort Key: place_id
-> Bitmap Heap Scan on place_attributes (cost=450351.86..2452151.90 rows=35838955 width=62)
Recheck Cond: (metadata_dictionary_id = ANY ('{5,7,9,10,11,12,13,33,35,46,51,52,53,54,55,57,58,59}'::integer[]))
-> Bitmap Index Scan on place_attributes_metadata_dictionary_id_idx (cost=0.00..441392.12 rows=35838955 width=0)
Index Cond: (metadata_dictionary_id = ANY ('{5,7,9,10,11,12,13,33,35,46,51,52,53,54,55,57,58,59}'::integer[]))
解决方法
更新统计分析然后选择最优的执行计划
(Updates statistics used by the planner to determine the most efficient way to execute a query.)
postgres=# vacuum analyze place_attributes;
或者临时关闭enable_hashagg:
(Enables or disables the query planner's use of hashed aggregation plan types. The default is on)
# set enable_hashagg =0;
再次查看执行计划，发现执行计划不再走hashaggregate
yangzi=# explain SELECT place_id, string_agg(concat(metadata_dictionary_id, '@[email protected]', value), '``'::text) AS rich_attributes FROM place_attributes WHERE metadata_dictionary_id = ANY (ARRAY[5, 7, 9, 10, 11, 12, 13, 33, 35, 46, 51, 52, 53, 54, 55, 57, 58, 59]) group by place_attributes.place_id;
QUERY PLAN
------------------------------------------------------------------------------------------------------------------------------------
GroupAggregate (cost=7622781.80..7985216.03 rows=323575 width=62)
Group Key: place_id
-> Sort (cost=7622781.80..7712379.18 rows=35838955 width=62)
Sort Key: place_id
-> Bitmap Heap Scan on place_attributes (cost=450351.86..2452151.90 rows=35838955 width=62)
Recheck Cond: (metadata_dictionary_id = ANY ('{5,7,9,10,11,12,13,33,35,46,51,52,53,54,55,57,58,59}'::integer[]))
-> Bitmap Index Scan on place_attributes_metadata_dictionary_id_idx (cost=0.00..441392.12 rows=35838955 width=0)
Index Cond: (metadata_dictionary_id = ANY ('{5,7,9,10,11,12,13,33,35,46,51,52,53,54,55,57,58,59}'::integer[]))
最后再去执行原SQL,没有报错，并且很快完成。
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