sh SART研究#UofT #MA #Strother #McIntosh

Posted 2021-05-07

### erGNB ###

/scratch/strother_lab/jeusebio/PRONTO/trunk_june162016/PRONTO/Run_Pipelines.py -i /scratch/strother_lab/jeusebio/PRONTO/session1_sart_young_erGNB_JE.txt -c /scratch/strother_lab/jeusebio/PRONTO/pipelineList_JE.txt -a erGNB -m dPR -r /scratch/strother_lab/jeusebio/PRONTO/MNI_template/MNI152_T1_1mm_brain.nii -e matlab -v "3.125 3.125 5.0" --memory 8G --Nblock 4 --WIND 8 --TPATTERN auto_hdr 

### erCVA ###

/scratch/strother_lab/jeusebio/PRONTO/trunk_june162016/PRONTO/Run_Pipelines.py -i /scratch/strother_lab/jeusebio/PRONTO/session1_sart_young_erCVA_JE.txt -c /scratch/strother_lab/jeusebio/PRONTO/pipelineList_JE.txt -a erCVA -m dPR -r /scratch/strother_lab/jeusebio/PRONTO/MNI_template/MNI152_T1_1mm_brain.nii -e matlab -v "3.125 3.125 5.0" --memory 8G --Nblock 4 --WIND 8 --subspace "onecomp" --TPATTERN auto_hdr --contrast 'NOGO-GO'

qdel -u jeusebio

qstat -explain c -j <JOBID>      # to examine the details of a running job
qmod -cj <JOBID>                 # to get jobs out of error states

## erCVA ##

oppni -i /global/home/hpc3586/SART_data/oppni_input_files/GO_sart_combined.txt -c /global/home/hpc3586/SART_data/oppni_pipelines/motreg1_customreg01_detrend16.txt -a erCVA -m dPR -r /global/home/hpc3586/SART_data/MNI_template/MNI152_T1_1mm_brain.nii -e matlab -v "3.125 3.125 5.0" -k 1 --Nblock 4 --WIND 8 --subspace "onecomp" --TPATTERN auto_hdr --drf 0.3 --cluster FRONTENAC --os ALL --convolve 0 --num_PCs 4 --spm "zscore" --walltime "30:30:30"

## If it doesn't work, replace '-e matlab' with '-e compiled'

## check jobs being submitted

oppni -s /home/hpc3586/SART_data/output/GO/Older/processing_GO_sart_old_erCVA_rm3_erCVA